ncRNA Mapper
Developed by Youri Hoogstrate |
Introduction
ncRNA Mapper is a computer program that gives more insight in the localization of sequencing fragments. Given that sequencing of RNA gives reads at fixed base-positions, ncRNA Mapper analyzes the alignments (generated by Short Sequence Location Mapper; SSLM) by:
- visualizing them
- retrieving the conservation of each given nucleotide
- predicting the folding (done by centroid_fold)
- calculatinging how conserved the fragment is relative to the whole RNA sequence
The input that is required to accomplish these methods is SSLM-data, the RNA file where SSLM is based on, and an internet connection to download the conservation tracks.
For more information:
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Downloads:
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ncRNA Mapper
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2011
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Manual
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Pdf file
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Windows Executable
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Includes ncRNA_Mapper.exe and the dataset we used
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ZIP file
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wxPython source code
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Raw wxPython code (put this in de directory of the executable because of the necessary files!)
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ZIP file
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GATC Platform © 2002 - 2011 Erasmus MC.
Page Last Updated : Wed, 03 Feb 2010 16:56:50 +0100
